Protein ZmPHD3
ZmPHD3 is a protein in the PHD family.
Information
Coreg Name: ZmPHD3
Species: Maize
Coreg Family: PHD
Gene Name(Synonym): PHD3
Uniprot ID: A0A1D6PDQ1
Subgenome: 1

Protein ZmPHD3

ZmPHD3 is a protein in the PHD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
Alfin-like
Zm00001eb302190_T001
Zm00001eb302190_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d019039DAPseq no logo sequence fimo position
Zm00001d019039DAPseq no logo sequence fimo position
Zm00001d019039ChIPseq no logo sequence fimo position
Zm00001d019039PChIPseq no logo sequence fimo position

Interactions where ZmPHD3 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmPHD3 is the target  
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There are 92 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb302190_T001 from maize genome v5

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
Alfin-like
Hover here to show all domains

Nucleotide Sequence
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CGAAAAGCGCGCGGCGAAGGAAAAG...

GRMZM2G097726_T01 from maize genome v3

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVIY

Nucleotide Sequence
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TCGAACGGCCGATCTCGTCCTCACC...

GRMZM2G097726_T02 from maize genome v3


Related TFome: pUT5991

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

Nucleotide Sequence
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TCGAACGGCCGATCTCGTCCTCACC...

GRMZM2G097726_T03 from maize genome v3

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAV

Nucleotide Sequence
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TCGAACGGCCGATCTCGTCCTCACC...

Zm00001d019039_T001 from maize genome v4

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKYNFN

Nucleotide Sequence
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GCGACCGCGAGCGCCTCCGCATTTC...

Zm00001d019039_T002 from maize genome v4

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

Nucleotide Sequence
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GCGACCGCGAGCGCCTCCGCATTTC...

Zm00001eb302190_T002 from maize genome v5

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCE
ECSDWFHPACIGMTIKEAKKLEHFFCQTCTAENGKMVENSHEATAQSEEKYNFN

Nucleotide Sequence
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AAAAAAAGCAACTTCACGCGAGGGA...

Zm00001eb302190_T003 from maize genome v5

Amino Acid Sequence
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MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVRVRVRWYYRPEESIGGRRPFH
GSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAEDFFCRFEYKSATGSFVPDRIAV

Nucleotide Sequence
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AAAAAAAGCAACTTCACGCGAGGGA...


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